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Pull requests: malariagen/malariagen-data-python

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Pull requests list

feat: allow snp_allele_frequencies to accept genomic regions
#1076 opened Mar 7, 2026 by joshitha1808 Loading…
1
Add docstring to diplotype_pairwise_distances function
#1075 opened Mar 7, 2026 by Sally-designs Loading…
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1
Added missing docstrings for genome_features functions
#1074 opened Mar 7, 2026 by jemmziray-tech Loading…
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1
Add docstring to snp_genotype_allele_counts function(#1070)
#1073 opened Mar 7, 2026 by Sally-designs Loading…
1
Add docstring to genome_feature_children method(#1070)
#1072 opened Mar 7, 2026 by Sally-designs Loading…
1
Add VCF export support for SNP call datasets
#1071 opened Mar 7, 2026 by adilraza99 • Draft
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1
Add caching to general_metadata to avoid repeated metadata parsing
#1069 opened Mar 7, 2026 by vshnvii Loading…
Enhance docstring for frequency plot function added doc string #826
#1068 opened Mar 7, 2026 by Sally-designs Loading…
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2
Add LD-pruned biallelic SNP access method
#1067 opened Mar 7, 2026 by adilraza99 Loading…
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3
Handle empty SNP/AA results in allele frequency tests
#1066 opened Mar 6, 2026 by adilraza99 Loading…
1
Optimize quarter column computation using vectorized NumPy operations
#1065 opened Mar 6, 2026 by vshnvii Loading…
1
Added LD pruning support and PLINK export for ADMIXTURE analysis
#1063 opened Mar 6, 2026 by rehanxt5 Loading…
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10
Add VcfConverter module to export biallelic SNPs to Variant Call Format
#1061 opened Mar 6, 2026 by shauryam2807 Loading…
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1
feat: add VCF export functionality resolves #1054
#1060 opened Mar 6, 2026 by Tanisha127 Loading…
1 of 2 tasks
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feat: add LD pruning and admixture data preparation
#1059 opened Mar 6, 2026 by 31puneet Loading…
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1
Add example notebook demonstrating genomic data exploration using mal…
#1058 opened Mar 6, 2026 by priyarai121 Loading…
1
fix: decode URL-escaped local filesystem paths in _init_filesystem
#1057 opened Mar 6, 2026 by Sharon-codes Loading…
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2
Add cohort_geometries() to access cohort GeoJSON metadata
#1053 opened Mar 5, 2026 by adilraza99 Loading…
1
Improve robustness of cohorts() metadata access
#1052 opened Mar 5, 2026 by adilraza99 Loading…
1
feat: enhance biallelic_snps_to_plink with sex calls, phenotypes, and…
#1051 opened Mar 5, 2026 by 31puneet Loading…
1
fix: replace print() statements with warnings.warn() in production code
#1050 opened Mar 5, 2026 by suhaan-24 Loading…
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1
Fix LoggingHelper.set_level() not updating logger level
#1047 opened Mar 5, 2026 by suhr25 Loading…
2
Add NON_SYNONYMOUS_START and NON_SYNONYMOUS_STOP effect classifications (fixes #1045)
#1046 opened Mar 5, 2026 by ZiadXI Loading…
1
Fix incorrect type hint for _aim_metadata_dtype
#1043 opened Mar 5, 2026 by vshnvii Loading…
fix: replace assert isinstance(...) statements with proper TypeError exceptions across codebase
#1042 opened Mar 4, 2026 by suhaan-24 Loading…
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ProTip! What’s not been updated in a month: updated:<2026-02-07.