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chore: bump shared workflows to v14 and use uv run in prek #3412

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Merged
jeromekelleher merged 2 commits into from
Mar 4, 2026
Merged

chore: bump shared workflows to v14 and use uv run in prek #3412

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3c285cd
chore: bump shared workflows to v14 and use uv run in prek
jeromekelleher Mar 4, 2026
0ea6236
Update to use only-group
jeromekelleher Mar 4, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/docs.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ env:

jobs:
Docs:
uses: tskit-dev/.github/.github/workflows/docs.yml@v12
uses: tskit-dev/.github/.github/workflows/docs.yml@v14
with:
pyproject-directory: python
additional-apt-packages: doxygen
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2 changes: 1 addition & 1 deletion .github/workflows/lint.yml
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Expand Up @@ -5,6 +5,6 @@ on:

jobs:
Lint:
uses: tskit-dev/.github/.github/workflows/lint.yml@v12
uses: tskit-dev/.github/.github/workflows/lint.yml@v14
with:
pyproject-directory: python
8 changes: 4 additions & 4 deletions .github/workflows/tests.yml
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Expand Up @@ -13,21 +13,21 @@ jobs:

packaging:
name: Python packaging
uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v12
uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v14
with:
pyproject-directory: python
cli-test-cmd: tskit --help

test-c:
name: C tests
uses: tskit-dev/.github/.github/workflows/c-tests.yml@v12
uses: tskit-dev/.github/.github/workflows/c-tests.yml@v14
with:
library-directory: c
secrets: inherit

test-python-c:
name: Python-C tests
uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v12
uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v14
with:
tests: python/tests/test_python_c.py python/tests/test_dict_encoding.py
pyproject-directory: python
Expand All @@ -36,7 +36,7 @@ jobs:

test:
name: Python
uses: tskit-dev/.github/.github/workflows/python-tests.yml@v12
uses: tskit-dev/.github/.github/workflows/python-tests.yml@v14
with:
os: ${{ matrix.os }}
python-version: ${{ matrix.python }}
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2 changes: 1 addition & 1 deletion .github/workflows/wheels.yml
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Expand Up @@ -8,7 +8,7 @@ on:

jobs:
build-wheels:
uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v12
uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v14
with:
pyproject-directory: python

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17 changes: 3 additions & 14 deletions prek.toml
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Expand Up @@ -4,22 +4,11 @@
# rules implementing lint workflows. We do not use any remote
# workflow repos.

# files = { glob = [
# "tskit/**",
# "benchmark/**",
# "tests/**",
# "_tskitmodule.c",
# "*.toml",
# "docs/**",
# ]}

exclude = { glob = ["c/subprojects/**"]}

[[repos]]
repo = "builtin"
hooks = [
# { id = "trailing-whitespace" },
# { id = "end-of-file-fixer" },
{ id = "check-added-large-files" },
{ id = "check-merge-conflict" },
{ id = "mixed-line-ending" },
Expand All @@ -35,7 +24,7 @@ hooks = [
id = "ruff-check",
name = "ruff check",
language = "system",
entry = "ruff check --fix --force-exclude",
entry = "uv run --project=python --only-group=lint ruff check --fix --force-exclude",
types = ["python"],
},
]
Expand All @@ -47,7 +36,7 @@ hooks = [
id = "ruff-format",
name = "ruff format",
language = "system",
entry = "ruff format --force-exclude",
entry = "uv run --project=python --only-group=lint ruff format --force-exclude",
types = ["python"],
},
]
Expand All @@ -59,7 +48,7 @@ hooks = [
id = "clang-format",
name = "clang-format",
language = "system",
entry = "clang-format -i",
entry = "uv run --project=python --only-group=lint clang-format -i",
types = ["c"],
verbose = true,
},
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