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@stuart-lab

Stuart Lab

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  1. signac signac Public

    R toolkit for the analysis of single-cell chromatin data

    R 403 100

  2. fragtk fragtk Public

    Fragment file toolkit

    Rust 7

Repositories

Showing 10 of 12 repositories
  • remo-manuscript Public

    Code to reproduce analyses shown in the REMO manuscript

    stuart-lab/remo-manuscript’s past year of commit activity
    R 0 0 0 0 Updated Jan 27, 2026
  • REMO Public

    Regulatory element modules

    stuart-lab/REMO’s past year of commit activity
    R 0 0 0 0 Updated Jan 26, 2026
  • signac Public

    R toolkit for the analysis of single-cell chromatin data

    stuart-lab/signac’s past year of commit activity
    R 403 100 18 2 Updated Jan 20, 2026
  • REMO.v1.GRCh38 Public

    Regulatory element modules for GRCh38

    stuart-lab/REMO.v1.GRCh38’s past year of commit activity
    R 1 0 0 0 Updated Jan 16, 2026
  • human-chromatin-atlas Public

    Organization of published human adult and fetal scATAC-seq data

    stuart-lab/human-chromatin-atlas’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 6, 2025
  • fragtk Public

    Fragment file toolkit

    stuart-lab/fragtk’s past year of commit activity
    Rust 7 MIT 0 0 0 Updated Oct 21, 2025
  • spars Public

    Disk-based sparse matrix stats

    stuart-lab/spars’s past year of commit activity
    Rust 7 MIT 0 0 0 Updated Aug 27, 2025
  • fragtk-benchmark Public

    Benchmarking scATAC-seq count matrix quantification methods

    stuart-lab/fragtk-benchmark’s past year of commit activity
    Python 0 0 0 0 Updated May 3, 2025
  • cellranger-workflow Public
    stuart-lab/cellranger-workflow’s past year of commit activity
    Python 2 0 0 0 Updated Dec 30, 2024
  • aws-setup Public

    AWS setup information and scripts

    stuart-lab/aws-setup’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 19, 2023
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