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DiagVI tutorials#508

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michelta00 wants to merge 12 commits intoscverse:mainfrom
quadbio:diagvi-tutorials
Open

DiagVI tutorials#508
michelta00 wants to merge 12 commits intoscverse:mainfrom
quadbio:diagvi-tutorials

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@michelta00
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@michelta00 michelta00 commented Feb 21, 2026

Formatting

  • My tutorial has only one top-level (#) header

Reproducibility

  • My tutorial works on Google Colab
  • My tutorial sets scvi.settings.seed = 0 at the beginning of the notebook
  • My tutorial has been run and includes outputs (e.g. plots, tables)

Other

  • Counts and normalized data should co-exist in the datasets, see the API overview for an example
  • For scRNA-seq data, normalization should be counts per median library size and then log1p transformed -- if not, a reason should be given

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@michelta00 michelta00 marked this pull request as draft February 21, 2026 17:47
@michelta00 michelta00 marked this pull request as ready for review February 22, 2026 11:33
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