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@qupath

QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.3k 328

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 21 24

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 48 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 9 7

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 10 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 6 4

Repositories

Showing 10 of 51 repositories
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,289 GPL-3.0 328 33 4 Updated Feb 5, 2026
  • qubalab Public

    Lab for quantitative bioimage analysis experiments in Python

    qupath/qubalab’s past year of commit activity
    Python 19 Apache-2.0 5 0 1 Updated Feb 4, 2026
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    1 Apache-2.0 1 2 0 Updated Jan 28, 2026
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero’s past year of commit activity
    Java 8 Apache-2.0 2 3 0 Updated Jan 28, 2026
  • javadoc-viewer Public

    A simple JavaFX Javadoc viewer

    qupath/javadoc-viewer’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Jan 26, 2026
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    qupath/qupath-extension-instanseg’s past year of commit activity
    Java 29 Apache-2.0 6 7 0 Updated Jan 21, 2026
  • qupath-imglib2 Public

    A Java library to link QuPath and ImgLib2

    qupath/qupath-imglib2’s past year of commit activity
    Java 1 Apache-2.0 1 1 0 Updated Jan 16, 2026
  • libczi-jars Public
    qupath/libczi-jars’s past year of commit activity
    0 0 0 0 Updated Jan 16, 2026
  • extension-manager Public

    A manager for catalogs and extensions.

    qupath/extension-manager’s past year of commit activity
    Java 0 Apache-2.0 3 0 0 Updated Jan 12, 2026
  • actions Public

    GitHub actions for QuPath and related repositories

    qupath/actions’s past year of commit activity
    Shell 0 Apache-2.0 1 0 0 Updated Jan 7, 2026
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