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@pughlab

Pugh Lab

The Pugh Laboratory at the Princess Margaret Cancer Centre

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  1. PughLabReadme PughLabReadme Public

    Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

    1

  2. cbioportal cbioportal Public

    Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    Java 2

  3. ConsensusCruncher ConsensusCruncher Public

    ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

    Jupyter Notebook 21 9

  4. VisCap VisCap Public

    VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

    R 22 11

  5. crescent crescent Public

    The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

    R 8 4

  6. pipeline-suite pipeline-suite Public

    Collection of pipelines for NGS analysis along with utilities

    Perl 4 3

Repositories

Showing 10 of 116 repositories
  • ctims Public

    CTIMS project

    pughlab/ctims’s past year of commit activity
    CSS 3 Apache-2.0 10 8 4 Updated Feb 11, 2026
  • tigerdb Public

    TIGERdb: T-Cell and ImmunoGlobulin Epitope Receptor DataBase

    pughlab/tigerdb’s past year of commit activity
    TypeScript 1 0 0 1 Updated Feb 10, 2026
  • MismatchResolveDX Public

    This pipeline is used for the analysis of the MismatchResolveDx (previously the MultiMMR) sequencing panel (including shallow WGS and targeted sequencing of conventional DNA and methylation sites).

    pughlab/MismatchResolveDX’s past year of commit activity
    Perl 0 1 0 0 Updated Feb 9, 2026
  • ctims-matchminer-engine Public
    pughlab/ctims-matchminer-engine’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Feb 5, 2026
  • matchminer-api Public Forked from dfci/matchminer-api

    A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

    pughlab/matchminer-api’s past year of commit activity
    Python 0 13 0 0 Updated Jan 14, 2026
  • TRI_LRWGS_glioma Public
    pughlab/TRI_LRWGS_glioma’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 12, 2026
  • pipeline-suite Public

    Collection of pipelines for NGS analysis along with utilities

    pughlab/pipeline-suite’s past year of commit activity
    Perl 4 3 0 0 Updated Dec 23, 2025
  • EarlyDetectionHBOC Public
    pughlab/EarlyDetectionHBOC’s past year of commit activity
    R 0 0 0 0 Updated Dec 4, 2025
  • ped_CapTCRseq Public

    Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation

    pughlab/ped_CapTCRseq’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 26, 2025
  • ctims-pages Public

    CTIMS Github Pages

    pughlab/ctims-pages’s past year of commit activity
    0 0 0 0 Updated Nov 19, 2025
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