pysamstats

A small Python utility for generating per-position statistics (coverage, etc.) from SAM/BAM files via pysam.

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
fixture		fixture
pysam		pysam
samtools		samtools
.gitignore		.gitignore
.project		.project
.pydevproject		.pydevproject
README.md		README.md
profile_baseq.py		profile_baseq.py
profile_coverage.py		profile_coverage.py
profile_mapq.py		profile_mapq.py
profile_minimal_coverage.py		profile_minimal_coverage.py
profile_tlen.py		profile_tlen.py
pysamstats.pyx		pysamstats.pyx
see_baseq.py		see_baseq.py
see_coverage.py		see_coverage.py
see_mapq.py		see_mapq.py
see_minimal_coverage.py		see_minimal_coverage.py
see_normed_coverage.py		see_normed_coverage.py
see_tlen.py		see_tlen.py
see_variation.py		see_variation.py
setup.py		setup.py
speed_baseq.py		speed_baseq.py
speed_coverage.py		speed_coverage.py
speed_mapq.py		speed_mapq.py
speed_minimal_coverage.py		speed_minimal_coverage.py
speed_tlen.py		speed_tlen.py
speed_variation.py		speed_variation.py

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