These templates are used to create reports from SmartDots events, and generate standardized figures and metrics to improve the quality assessment and transparency of biological parameters estimations.
There are currently two reporting templates available: one for the aging module and one for the maturity staging module.
The settings for the report are contained in the config.json file, in the bootstrap/initial/data folder. Currently, the code requires direct access to the SmartDots database and so must be run by someone with the appropriate access. To run the template:
library(icesTAF)
# download data
taf.bootstrap(taf = TRUE)
# run analysis and create reports
sourceAll()To change the configuration and run the project, the script worksheet.R
is provided to set up the config file when changeing eventID for example.
Typical report pulls can be done directly from the event page on the SmartDots web-API. The repository and code is available for development and debugging purposes. They can also be used and adapted for institute-specific SmartDots API derivatives that do not transit through ICES systems and databases.
For help or clarification regarding the reports, contact Patrícia Gonçalves Email or Côme Denechaud Email.
- Patrícia Gonçalves
- Côme Denechaud
- Colin Millar
See the LICENSE.md file for details