Upgrade Bazel to 9.0.0

[redsun82]

Summary

Upgrade Bazel from 8.x to 9.0.0.

Bazel 9 removes native.cc_* and native.java_* rules from Starlark scope, requiring explicit imports from rules_cc and rules_java.

Changes

Core upgrade

• Upgrade Bazel to 9.0.0 in .bazelversion

New module dependencies

• rules_cc 0.2.16: provides cc_binary, cc_library, cc_test
• rules_java 9.0.3: provides java_* rules
• Update rules_go 0.56.1 → 0.59.0 (Bazel 9 compatibility)
• Update gazelle 0.40.0 → 0.47.0 (rules_go 0.59.0 compatibility)
• Update rules_nodejs 6.2.0-codeql.1 → 6.7.3 (upstream version)
• Update rules_kotlin 2.2.0-codeql.1 → 2.2.2-codeql.1 (Windows bzlmod fix)

Configuration

• Add +@rules_cc to --incompatible_autoload_externally for graceful migration
• Register Python 3.12 toolchain (rules_python 1.x requires explicit registration)
• Disable Android SDK auto-detection (ANDROID_HOME=) to avoid rules_android Bazel 9 compatibility issues

Starlark migrations

• Add explicit load() statements for cc_binary, cc_library, CcInfo in .bzl files
• Replace native.cc_* calls with explicit rule names

BUILD file migrations

• Add explicit load() for cc_binary, cc_library, cc_test from @rules_cc//cc:defs.bzl
• Add explicit load() for java_library, java_test from @rules_java//java:defs.bzl

C++ runfiles API migration

• Move from @bazel_tools//tools/cpp/runfiles to @rules_cc//cc/runfiles
• Update include path and namespace in zipmerge_test.cpp

Windows compatibility fixes

• Upgrade rules_kotlin to 2.2.2 which fixes Windows bzlmod builder classpath issues
• Fix codegen templates to be properly included in runfiles (dbscheme, ql, rust)

Fixes

• Correct malformed JSON in rules_nodejs metadata (trailing comma)

[Copilot]

Pull request overview

This PR upgrades Bazel from version 8.4.2 to 9.0.0, a major version upgrade that removes native.cc_* and native.java_* rules from Starlark scope, requiring explicit imports from rules_cc and rules_java.

Changes:

• Upgrade Bazel to 9.0.0 and add new module dependencies (rules_cc 0.2.16, rules_java 9.0.3)
• Update related dependencies for Bazel 9 compatibility (rules_go, gazelle, rules_nodejs, rules_kotlin)
• Add explicit load() statements for cc_* and java_* rules across .bzl and BUILD files
• Migrate C++ runfiles API from @bazel_tools to @rules_cc

Reviewed changes

Copilot reviewed 20 out of 20 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
.bazelversion	Upgrade Bazel version from 8.4.2 to 9.0.0
.bazelrc	Add @rules_cc to incompatible_autoload_externally flag and disable Android SDK auto-detection
MODULE.bazel	Add rules_cc and rules_java dependencies, update rules_go/gazelle/rules_nodejs/rules_kotlin versions, register Python 3.12 toolchain
swift/rules.bzl	Add load() for cc_binary, cc_library, CcInfo; replace native.cc_* calls
swift/logging/BUILD.bazel	Add load() for cc_library from rules_cc
shared/cpp/BUILD.bazel	Add load() for cc_library from rules_cc
misc/bazel/cmake/cmake.bzl	Add load() for CcInfo from rules_cc
misc/bazel/internal/zipmerge/BUILD.bazel	Add load() for cc_* rules; migrate runfiles dependency from @bazel_tools to @rules_cc
misc/bazel/internal/zipmerge/zipmerge_test.cpp	Update runfiles include path and namespace from bazel::tools to rules_cc::cc
misc/codegen/BUILD.bazel	Add dbscheme, ql, and rust template filegroups to data dependencies
misc/codegen/templates/BUILD.bazel	Create filegroups for dbscheme, ql, and rust templates
javascript/extractor/BUILD.bazel	Add load() for java_library from rules_java
javascript/extractor/test/com/semmle/js/extractor/test/BUILD.bazel	Add load() for java_test from rules_java
misc/bazel/registry/modules/rules_kotlin/metadata.json	Add rules_kotlin 2.2.2-codeql.1 to versions list
misc/bazel/registry/modules/rules_kotlin/2.2.2-codeql.1/*	Add new rules_kotlin version with patches and MODULE.bazel configuration
misc/bazel/registry/modules/rules_kotlin/2.2.0-codeql.1/source.json	Reorder patches (cosmetic change for consistency)
misc/bazel/registry/modules/rules_nodejs/metadata.json	Fix malformed JSON (critical issue - file is incomplete after changes)

[Copilot]

The JSON file is malformed after the changes. Line 3 should be part of a complete JSON array, but it's missing the closing bracket and brace. The file should be:

{
    "versions": [
        "6.2.0-codeql.1"
    ]
}

The diff shows lines being removed but line 3 appears incomplete in the result.

Suggested change

	"6.2.0-codeql.1"
	"6.2.0-codeql.1"
	]
	}