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@gear-genomics

GEAR

Genome Analysis Server

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  1. tracy tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 122 24

  2. dicey dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 53 4

  3. indigo indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 36 9

  4. wily-dna-editor wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    JavaScript 15 1

  5. silica silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 11 1

  6. teal teal Public

    Sanger Trace Viewer

    JavaScript 10 2

Repositories

Showing 10 of 24 repositories
  • saint Public

    [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

    gear-genomics/saint’s past year of commit activity
    JavaScript 4 1 0 0 Updated Mar 2, 2026
  • apps-page Public

    GEAR home page

    gear-genomics/apps-page’s past year of commit activity
    Vue 2 0 0 0 Updated Mar 2, 2026
  • teal Public

    Sanger Trace Viewer

    gear-genomics/teal’s past year of commit activity
    JavaScript 10 GPL-3.0 2 0 0 Updated Mar 2, 2026
  • silica Public

    In-silico PCR amplification on complete genomes

    gear-genomics/silica’s past year of commit activity
    JavaScript 11 GPL-3.0 1 0 0 Updated Mar 2, 2026
  • gearlog Public
    gear-genomics/gearlog’s past year of commit activity
    Python 0 0 0 0 Updated Mar 2, 2026
  • wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    gear-genomics/wily-dna-editor’s past year of commit activity
    JavaScript 15 GPL-3.0 1 0 0 Updated Mar 2, 2026
  • bgen Public

    Barcode Generator

    gear-genomics/bgen’s past year of commit activity
    JavaScript 3 GPL-3.0 2 0 0 Updated Mar 2, 2026
  • halo Public

    Halo: Haplotype processor

    gear-genomics/halo’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Mar 2, 2026
  • pearl Public

    Patching references via trace assemblies

    gear-genomics/pearl’s past year of commit activity
    JavaScript 5 GPL-3.0 2 5 0 Updated Mar 2, 2026
  • sage Public

    Sanger Trace Alignment

    gear-genomics/sage’s past year of commit activity
    JavaScript 4 GPL-3.0 0 0 0 Updated Mar 2, 2026