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@aomlomics

AOML 'Omics

Official GitHub organization of the AOML 'Omics program. AOML is a federal research laboratory of the National Oceanic and Atmospheric Administration (NOAA).

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  1. datasets datasets Public

    List of datasets generated by the AOML 'Omics program

    HTML 2

  2. tourmaline tourmaline Public

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    Python 45 22

  3. edna2obis edna2obis Public

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    Python 2

  4. FAIReSheets FAIReSheets Public

    Python 7

Repositories

Showing 10 of 43 repositories
  • ocean-dna-explorer Public
    aomlomics/ocean-dna-explorer’s past year of commit activity
    TypeScript 1 0 3 0 Updated Feb 25, 2026
  • edna2obis Public

    Code to convert eDNA metabarcoding data to Darwin Core for OBIS

    aomlomics/edna2obis’s past year of commit activity
    Python 2 MIT 0 1 0 Updated Feb 20, 2026
  • AOML_PCR_Protocol_Universal-SSU-V4V5-Parada Public

    Protocol for preparing 16S V4-V5 (EMP) amplicon libraries for Michigan State RTSF

    aomlomics/AOML_PCR_Protocol_Universal-SSU-V4V5-Parada’s past year of commit activity
    0 0 0 0 Updated Feb 6, 2026
  • protocols Public

    Protocols used by AOML Omics labs, following the BeBOP-OBON standard

    aomlomics/protocols’s past year of commit activity
    Shell 3 CC0-1.0 2 8 0 Updated Feb 6, 2026
  • FAIReSheets Public
    aomlomics/FAIReSheets’s past year of commit activity
    Python 7 0 2 0 Updated Feb 2, 2026
  • AOML_MetaG_LibPrep_Protocol_Illumina Public

    Protocol for preparing metagenomic libraries using Illumina DNA Prep

    aomlomics/AOML_MetaG_LibPrep_Protocol_Illumina’s past year of commit activity
    0 0 0 0 Updated Jan 27, 2026
  • USGS_PCR_Protocol_Eukarya-18S-V9-Lane-Medlin Public

    Protocol for preparing 18S V9 (EMP) amplicon libraries at USGS MDBC

    aomlomics/USGS_PCR_Protocol_Eukarya-18S-V9-Lane-Medlin’s past year of commit activity
    0 0 0 0 Updated Jan 26, 2026
  • NMNH_PCR_Protocol_Metazoa-COI-Leray-Geller Public

    Protocol for preparing COI (Leray-Geller) amplicon libraries at Smithsonian NMNH

    aomlomics/NMNH_PCR_Protocol_Metazoa-COI-Leray-Geller’s past year of commit activity
    0 0 0 0 Updated Jan 26, 2026
  • NMNH_PCR_Protocol_Eukarya-18S-V4-Stoeck-Piredda Public

    Protocol for preparing 18S V4 (Stoeck-Piredda) amplicon libraries at Smithsonian NMNH

    aomlomics/NMNH_PCR_Protocol_Eukarya-18S-V4-Stoeck-Piredda’s past year of commit activity
    0 0 0 0 Updated Jan 26, 2026
  • NMNH_PCR_Protocol_Fish-12S-MiFish-Miya Public

    Protocol for preparing 12S V5-V6 (MiFish) amplicon libraries at Smithsonian NMNH

    aomlomics/NMNH_PCR_Protocol_Fish-12S-MiFish-Miya’s past year of commit activity
    0 0 0 0 Updated Jan 26, 2026
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