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⚡ Bolt: [performance improvement] Bulk process symbol upserts in Indexer #92

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⚡ Bolt: [performance improvement] Bulk process symbol upserts in Indexer #92

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## 2024-05-27 - Batch processing for Code Symbol Indexing
**Learning:** Indexing large codebases with individual database and vector store writes results in severe N+1 query overhead, particularly due to the latency of multiple API calls per symbol to Pinecone, MongoDB, and Neo4j. Even minor code changes can trigger hundreds of individual sequential updates.
**Action:** Use batch processing for symbol updates. Collect all changed symbols within `Indexer._process_file` and perform bulk upserts using `CodeStore.upsert_symbols_bulk`, `PineconeVectorStore.add`, and a newly added `CodeGraphClient.upsert_symbols_bulk`. Also ensure embeddings are generated in batches using `embed_texts`.