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fix: defer siac._rust and pyhdf imports to avoid import-time failures#37

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copilot/review-codebase-and-fix-issues
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fix: defer siac._rust and pyhdf imports to avoid import-time failures#37
Copilot wants to merge 3 commits intofeat/refactorfrom
copilot/review-codebase-and-fix-issues

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Copilot AI commented Mar 7, 2026

Several optional/compiled dependencies were imported at module level, causing cascading import failures when pyhdf wasn't installed or the Rust extension (siac._rust) hadn't been compiled — breaking 22 test collection sites and masking ~168 tests.

Changes

  • earthdata_common.py — Move from pyhdf.SD import SD, SDC inside read_hdf4_dataset(). HDF4 reading is an optional, infrequent path; it should not gate the entire package import.

  • brdf/kernels.py, brdf_whittaker.py, rt/emulator/two_nn.py, solver/multigrid.py — Defer all from siac._rust import … calls to the point of first use (inside methods/functions). The Rust extension is a performance accelerator; classes that wrap it can now be instantiated and passed around without requiring a compiled extension, failing only when the accelerated code path is actually invoked.

    # Before — fails at import time if siac._rust not built
    from siac._rust import RossThickLiSparse as _RustKernels
    
    # After — fails only when BRDFKernels.compute() is called
    if self._rust_kernels is None:
        from siac._rust import RossThickLiSparse as _RustKernels
        self._rust_kernels = _RustKernels(self.hb, self.br)
  • satellite/sentinel2.pySentinel2Preprocessor.sensor_config now catches failures from load_sensor_config_from_srf (network unavailable, no cache) and falls back to the built-in nominal SENTINEL2A/B/C_CONFIG. Adds missing imports for SENTINEL2B_CONFIG and SENTINEL2C_CONFIG to support all three platforms.

Impact

Before After
Tests passing 412 580
Collection errors 22 1 (test_solver.py directly imports siac._rust)
Tests failing 11 22 (all require siac._rust at runtime — correct)

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Firewall rules blocked me from connecting to one or more addresses (expand for details)

I tried to connect to the following addresses, but was blocked by firewall rules:

  • gws-access.jasmin.ac.uk
    • Triggering command: /home/REDACTED/.local/bin/pytest pytest tests/unit/ --no-header -q --no-cov --ignore=tests/unit/test_solver.py python/siac/core/__init__.py stup/toolchains/stable-x86_64-REDACTED-linux-gnu/bin/rustc p -E " [0-9]{4,}bash _ d/mask.py stup/toolchains/stable-x86_64-unorigin --no�� --noprofile sh /opt/pipx_bin/uname " _ mulator/two_nn.p--noprofile uname (dns block)
    • Triggering command: /home/REDACTED/.local/bin/pytest pytest tests/unit/ --no-header -q --no-cov --ignore=tests/unit/test_solver.py python/siac/srf/sources/landsat.py e python/siac/srf/lscpu python/siac/srf/--parse=core python/siac/srf/__init__.py uname -rs python/siac/srf/loaders.py python/siac/srf/repository.py bash p -E " [0-9]{4,}git .py rgo/bin/sh bash (dns block)
  • sentiwiki.copernicus.eu
    • Triggering command: /home/REDACTED/.local/bin/pytest pytest tests/ --no-header -q --no-cov --ignore=tests/integration --ignore=tests/benchmarks --ignore=tests/unit/test_brdf_monthly_composite.py --ignore=tests/unit/test_brdf_monthly_database.py --ignore=tests/unit/test_brdf_whittaker.py --ignore=tests/unit/test_coverage_lifts_batch1.py --ignore=tests/unit/test_coverage_lifts_batch2_earthaccess.py --ignore=tests/unit/test_coverage_lifts_batch3_emulator_registry.py --ignore=tests/unit/test_coverage_lifts_batch4_zip_store.py --ignore=tests/unit/test_coverage_lifts_batch5_assembler_prior.py --ignore=tests/unit/test_coverage_lifts_batch7_cams_zip.py --ignore=tests/unit/test_coverage_lut_backend.py --ignore=tests/unit/test_coverage_misc_modules.py --ignore=tests/unit/test_earthaccess_providers.py --ignore=tests/unit/test_earthdata_common.py (dns block)
    • Triggering command: /usr/bin/python python -m pytest tests/unit/test_coverage_sentinel2_extra.py -v --no-cov rs/surface/spectral_mapping.py /home/REDACTED/work/_temp/ghcca-node/node/bin/grep "mcp-server-playbash (dns block)
    • Triggering command: /usr/bin/python python -m pytest tests/unit/test_coverage_sentinel2_extra.py::TestSentinel2Internals::test_resolve_paths_variants tests/unit/test_package_exports.py -v --no-cov --tb=long " --global y grep -l print( ut/constants.py /home/REDACTED/.local/bin/grep get --local y _.py (dns block)

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Original prompt

Review the current codebase in detail and provide suggestions and recommendations and implement fix's but make sure tests are passed


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Copilot AI and others added 2 commits March 7, 2026 22:37
…ures

- Make pyhdf import lazy in earthdata_common.py (moved to read_hdf4_dataset function)
- Make siac._rust imports lazy in brdf/kernels.py, brdf_whittaker.py, rt/emulator/two_nn.py, and solver/multigrid.py
- Fix Sentinel2Preprocessor.sensor_config to fall back to built-in nominal configs when SRF download fails (network unavailable or offline environment)
- Import SENTINEL2B_CONFIG and SENTINEL2C_CONFIG in satellite/sentinel2.py for proper fallback support

Result: 412 tests passing → 580 tests passing; 11 failures → 22 failures (all remaining failures require actual siac._rust Rust extension at runtime)

Co-authored-by: MarcYin <19539641+MarcYin@users.noreply.github.com>
- Add BLE001 noqa comment on bare Exception in sentinel2.py to document intentional broad catch
- Change return type of _init_rust_nn to Any with explanatory docstring
- Fix spelling: 'initialised' -> 'initialized' in kernels.py
- Use Any type annotation for _rust_kernels attribute in BRDFKernels

Co-authored-by: MarcYin <19539641+MarcYin@users.noreply.github.com>
Copilot AI changed the title [WIP] Review codebase and implement fixes with passing tests fix: defer siac._rust and pyhdf imports to avoid import-time failures Mar 7, 2026
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