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Weight drop alert update #1501

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Weight drop alert update #1501

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8036820
Made changes to the Weights drop alert.
kollil Oct 10, 2025
34222c2
Added query.xml files for the db tables
kollil Dec 9, 2025
439341f
Added new functionality to the weights data
kollil Jan 9, 2026
9811c87
Added new exclusion clauses
kollil Jan 10, 2026
d49504c
Updated queries with more filters
kollil Jan 11, 2026
3fae10a
Updated queries
kollil Jan 15, 2026
c64648c
Updated query: Removed the animalid from the where clause
kollil Jan 15, 2026
ed95c68
Updated query: Removed the animalid from the where clause
kollil Jan 15, 2026
2e638a0
Updated query: Added new clauses,
kollil Jan 22, 2026
8978470
Updated query #2: Added new clauses,
kollil Jan 23, 2026
e2f0067
latest version
kollil Feb 13, 2026
dfa3148
Added a new area filter and fixed the duplicates issue in the email data
kollil Feb 27, 2026
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9 changes: 9 additions & 0 deletions onprc_ehr/resources/queries/study/Demographics_NotInMMA.query.xml
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<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="Demographics_NotInMMA" tableDbType="NOT_IN_DB">
<tableTitle>Demographics (Excluding animals in Weight MMA regimen)</tableTitle>
</table>
</tables>
</metadata>
</query>
54 changes: 54 additions & 0 deletions onprc_ehr/resources/queries/study/Demographics_NotInMMA.sql
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/*
Created by Kollil in Dec 2025
Tkt # 13461
Added two filters to the Demographics dataset:
1. Filter out any animal with the following SNOMED Codes:
Begin active weight management regimen (P-YY961)
However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
Release from active weight management regimen (P-YY960)
2. Remove Shelters, Corral and Hospital locations from the lists
*/

SELECT
d.Id.curlocation.area AS Area,
d.Id.curlocation.room AS Room,
d.Id.curlocation.cage AS Cage,
d.Id,
d.Id.utilization.use AS ProjectsAndGroups,
d.species,
d.geographic_origin,
d.gender AS Sex,
d.calculated_status,
d.birth,
d.Id.Age.YearAndDays,
d.Id.MostRecentWeight.MostRecentWeight,
d.Id.MostRecentWeight.MostRecentWeightDate,
d.Id.viral_status.viralStatus,
d.history
FROM Demographics d
WHERE d.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital', 'Catch Area')-- Exclude animals from these locations
AND NOT (-- Exclude females under 5yrs, males under 7yrs
(d.gender.code = 'f' AND d.Id.age.ageInYears < 5)
OR (d.gender.code = 'm' AND d.Id.age.ageInYears < 7)
)
AND NOT EXISTS (
-- -- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
SELECT 1
FROM study.WeightManagementMMAData b
WHERE b.Id = d.Id
AND b.code = 'P-YY961'
AND b.date = (
SELECT MAX(b2.date)
FROM study.WeightManagementMMAData b2
WHERE b2.Id = d.Id
AND b2.code = 'P-YY961'
)
AND NOT EXISTS (
SELECT 1
FROM study.WeightManagementMMAData r
WHERE r.Id = d.Id
AND r.code = 'P-YY960'
AND r.date > b.date
)
)

50 changes: 50 additions & 0 deletions onprc_ehr/resources/queries/study/weightConsecutiveDrops_NotInMMA.query.xml
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<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="weightPctChange" tableDbType="NOT_IN_DB">
<tableTitle>Weight Change, Relative to Previous Weight (Excluding the animals enrolled in MMA)</tableTitle>
<description>This query shows the percent change of each weight, relative to the weight immediately prior to it</description>
<columns>
<column columnName="lsid">
<isKeyField>true</isKeyField>
<isHidden>true</isHidden>
</column>
<column columnName="CurWeight">
<url>/query/executeQuery.view?schemaName=study&amp;
query.queryName=weight&amp;
query.id~eq=${id}&amp;
query.sort=-date
</url>
</column>
<column columnName="PrevWeight">
<url>/query/executeQuery.view?schemaName=study&amp;
query.queryName=weight&amp;
query.date~eq=${PrevDate}&amp;
query.sort=-date
</url>
</column>
<column columnName="PctChange">
<url>/query/executeQuery.view?schemaName=study&amp;
query.queryName=weight&amp;
query.lsid~eq=${lsid}&amp;
</url>
<columnTitle>Percent Change</columnTitle>
</column>
<column columnName="Interval">
<columnTitle>Interval (Days)</columnTitle>
</column>
<column columnName="LatestWeight">
<columnTitle>Current Weight (kg)</columnTitle>
</column>
<column columnName="LatestWeightDate">
<columnTitle>Weight Date</columnTitle>
</column>
<!--<column columnName="qcstate">-->
<!--<isHidden>true</isHidden>-->
<!--</column>-->
</columns>
<titleColumn>PctChange</titleColumn>
</table>
</tables>
</metadata>
</query>
81 changes: 81 additions & 0 deletions onprc_ehr/resources/queries/study/weightConsecutiveDrops_NotInMMA.sql
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/*
* Copyright (c) 2013-2019 LabKey Corporation
*
* Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
*/
--this query contains a handful of calculated fields for the weights table
--it is designed to be joined into weights using lsid

SELECT
w.lsid,
w.Id,
w.date,
w.weight AS curWeight,
pd1.PrevDate as prevDate1,
pw1.weight AS prevWeight1,
Round(((w.weight - pw1.weight) * 100 / w.weight), 1) AS pctChange1,
timestampdiff('SQL_TSI_DAY', pw1.date, w.date) AS interval1,
pd2.PrevDate as PrevDate2,
pw2.weight AS PrevWeight2,
Round(((pw1.weight - pw2.weight) * 100 / pw1.weight), 1) AS PctChange2,
timestampdiff('SQL_TSI_DAY', pw2.date, pw1.date) AS Interval2
FROM study.weight w
--Find the next most recent weight date before this one
JOIN
(SELECT T2.Id, T2.date, max(T1.date) as PrevDate
FROM study.weight T1
JOIN study.weight T2 ON (T1.Id = T2.Id AND T1.date < T2.date)
WHERE t1.qcstate.publicdata = true AND t2.qcstate.publicdata = true
GROUP BY T2.Id, T2.date) pd1
ON (w.Id = pd1.Id AND w.date = pd1.Date)

--and the weight associated with that date
JOIN study.weight pw1
ON (w.Id = pw1.Id AND pw1.date = pd1.prevdate AND pw1.qcstate.publicdata = true)

--then find the next most recent date
LEFT JOIN
(SELECT T2.Id, T2.date, max(T1.date) as PrevDate
FROM study.weight T1
JOIN study.weight T2 ON (T1.Id = T2.Id AND T1.date < T2.date)
WHERE t1.qcstate.publicdata = true AND t2.qcstate.publicdata = true
GROUP BY T2.Id, T2.date
) pd2
ON (pd1.Id = pd2.Id AND pd1.PrevDate = pd2.date)

--and the weight associated with that date
JOIN study.weight pw2
ON (w.Id = pw2.Id AND pw2.date = pd2.prevdate AND pw2.qcstate.publicdata = true)
WHERE
w.qcstate.publicdata = true
AND pd1.date is not null
AND pd2.date is not null
--only include drops
AND w.weight < pw1.weight
AND pw1.weight < pw2.weight
AND ((w.weight - pw2.weight) * 100 / w.weight) < -3.0

AND w.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital')-- Exclude animals from these locations
AND NOT (-- Exclude females under 5yrs, males under 7yrs
(w.Id.demographics.gender.code = 'f' AND w.Id.age.ageInYears < 5)
OR (w.Id.demographics.gender.code = 'm' AND w.Id.age.ageInYears < 7)
)
AND w.Id NOT IN (
SELECT 1 -- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
FROM study.WeightManagementMMAData b
WHERE b.Id = w.Id
AND b.code = 'P-YY961'
AND b.date = (
SELECT MAX(b2.date)
FROM study.WeightManagementMMAData b2
WHERE b2.Id = w.Id
AND b2.code = 'P-YY961'
)
AND NOT EXISTS (
SELECT 1
FROM study.WeightManagementMMAData r
WHERE r.Id = w.Id
AND r.code = 'P-YY960'
AND r.date > b.date
)
)
68 changes: 68 additions & 0 deletions onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.query.xml
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<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="weightRelChange_NotInMMA" tableDbType="NOT_IN_DB">
<tableTitle>Weight Change, Relative to Current Weight (Excluding the animals enrolled in MMA)</tableTitle>
<description>This query shows the percent change of each weight, relative to the current weight</description>
<columns>
<column columnName="lsid">
<isKeyField>true</isKeyField>
<isHidden>true</isHidden>
</column>
<column columnName="Id">
<isHidden>false</isHidden>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>animal</fkTable>
<fkColumnName>id</fkColumnName>
</fk>
</column>
<column columnName="date">
<isHidden>false</isHidden>
<columnTitle>Prev Weight Date</columnTitle>
</column>
<column columnName="weight">
<columnTitle>Prev Weight (kg)</columnTitle>
</column>
<column columnName="PctChange">
<columnTitle>% Change Relative To Current</columnTitle>
<conditionalFormats>
<conditionalFormat>
<filters>
<filter operator="lte" value="-10"/>
</filters>
<bold>true</bold>
<backgroundColor>FF0000</backgroundColor>
</conditionalFormat>
<conditionalFormat>
<filters>
<filter operator="gte" value="10"/>
</filters>
<bold>true</bold>
<backgroundColor>458B00</backgroundColor>
</conditionalFormat>
</conditionalFormats>
</column>
<column columnName="IntervalInDays">
<columnTitle>Days Since Weight</columnTitle>
</column>
<column columnName="IntervalInMonths">
<columnTitle>Months Since Weight</columnTitle>
</column>
<column columnName="LatestWeight">
<columnTitle>Latest Weight (kg)</columnTitle>
<url>/query/executeQuery.view?schemaName=study&amp;
query.queryName=weight&amp;
query.date~eq=${LatestWeightDate}&amp;
query.sort=-date
</url>
</column>
<column columnName="LatestWeightDate">
<columnTitle>Latest Weight Date</columnTitle>
</column>
</columns>
<titleColumn>PctChange</titleColumn>
</table>
</tables>
</metadata>
</query>
85 changes: 85 additions & 0 deletions onprc_ehr/resources/queries/study/weightRelChange_NotInMMA.sql
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/*
Created by Kollil in Dec 2025
Tkt # 13461
Added two filters to the Demographics dataset:
1. Filter out any animal with the following SNOMED Codes:
Begin active weight management regimen (P-YY961)
However, we would need to include animals that have this additional SNOMED Code if it's entered AFTER the one above
Release from active weight management regimen (P-YY960)
2. Remove Shelters, Corral and Hospital locations from the lists
*/

SELECT DISTINCT
l.lsid,
l.Id,

l.date AS LatestWeightDate,
l.weight AS LatestWeight,

p.date, -- AS PrevWeightDate
p.weight, -- AS PrevWeight

timestampdiff('SQL_TSI_DAY', p.date, l.date) AS IntervalInDays,
age_in_months(p.date, l.date) AS IntervalInMonths,

CASE
WHEN p.weight IS NOT NULL AND p.weight > 0 THEN
ROUND(((l.weight - p.weight) * 100 / p.weight), 1)
ELSE NULL
END AS PctChange,

CASE
WHEN p.weight IS NOT NULL AND p.weight > 0 THEN
ABS(ROUND(((l.weight - p.weight) * 100 / p.weight), 1))
ELSE NULL
END AS AbsPctChange,

l.qcstate AS LatestQcState,
p.qcstate AS PrevQcState

FROM
(SELECT Id, MAX(date) AS LatestDate
FROM study.weight
GROUP BY Id) lw

JOIN study.weight l
ON l.Id = lw.Id
AND l.date = lw.LatestDate

LEFT JOIN study.weight p
ON p.Id = lw.Id
AND p.date = (
SELECT MAX(w2.date)
FROM study.weight w2
WHERE w2.Id = lw.Id
AND w2.date <= timestampadd('SQL_TSI_DAY', -30, lw.LatestDate)
AND w2.date >= timestampadd('SQL_TSI_DAY', -100, lw.LatestDate)
)

WHERE l.Id.curlocation.area NOT IN ('Shelters', 'Corral', 'Hospital', 'Catch Area')-- Exclude animals from these locations
AND NOT (-- Exclude females under 5yrs, males under 7yrs
(l.Id.demographics.gender.code = 'f' AND l.Id.age.ageInYears < 5)
OR (l.Id.demographics.gender.code = 'm' AND l.Id.age.ageInYears < 7)
)
AND l.qcstate.publicdata = true
AND NOT EXISTS (
-- -- Find animals whose latest 'Weight MMA BEGIN' has no later 'Weight MMA RELEASE'
SELECT 1
FROM study.WeightManagementMMAData b
WHERE b.Id = l.Id
AND b.code = 'P-YY961'
AND b.date = (
SELECT MAX(b2.date)
FROM study.WeightManagementMMAData b2
WHERE b2.Id = l.Id
AND b2.code = 'P-YY961'
)
AND NOT EXISTS (
SELECT 1
FROM study.WeightManagementMMAData r
WHERE r.Id = l.Id
AND r.code = 'P-YY960'
AND r.date > b.date
)
)

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