FSTlib - Python interface to the OpenFST Library with extensions

Version 0.2 for OpenFST 1.8.2 (Jan 2023).

License:

FSTlib is available under GPLv3.

FSTlib contains modified code from OpenFST as permitted under the Apache-2 license.

Download:

• Clone the FSTlib repository using "git clone https://bitbucket.org/schwarzlab/fstlib.git".

Installation:

• Run python setup.py build_ext --inplace inside the root project folder to compile the C extensions.

Contact:

Email questions, feature requests and bug reports to Roland Schwarz, roland@schwarzlab.de.

Please cite:

Kaufmann T, Petkovic M, Watkins TBK, Colliver EC, ..., Schwarz RF. MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution Genome Biology (23) 241 (2022)

January 2023, Roland Schwarz