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Arc Research Institute

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  1. evo2 evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.3k 389

  2. state state Public

    State is a machine learning model that predicts cellular perturbation response across diverse contexts

    Python 525 147

  3. arc-virtual-cell-atlas arc-virtual-cell-atlas Public

    Arc Virtual Cell Atlas

    Jupyter Notebook 500 50

  4. SRAgent SRAgent Public

    LLM agents for working with the SRA and associated bioinformatics databases.

    Python 153 31

  5. cell-eval cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    Python 122 42

  6. xsra xsra Public

    An efficient CLI to extract sequences from the SRA

    Rust 121 11

Repositories

Showing 10 of 33 repositories
  • bqtools Public

    A command line utilty for working with BINSEQ files

    ArcInstitute/bqtools’s past year of commit activity
    Rust 35 3 8 0 Updated Feb 28, 2026
  • evo2 Public

    Genome modeling and design across all domains of life

    ArcInstitute/evo2’s past year of commit activity
    Jupyter Notebook 3,337 Apache-2.0 389 45 1 Updated Feb 28, 2026
  • ScreenPro2 Public

    Flexible analysis of high-content CRISPR screening

    ArcInstitute/ScreenPro2’s past year of commit activity
    Python 32 7 11 (1 issue needs help) 0 Updated Feb 27, 2026
  • cell-load Public

    pytorch dataloaders for single-cell perturbation data

    ArcInstitute/cell-load’s past year of commit activity
    Python 43 MIT 24 12 4 Updated Feb 27, 2026
  • MULTI-evolve Public Forked from VincentQTran/MULTI-evolve

    MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins

    ArcInstitute/MULTI-evolve’s past year of commit activity
    Python 40 Apache-2.0 14 0 0 Updated Feb 27, 2026
  • cell-eval Public

    Comprehensive suite for evaluating perturbation prediction models

    ArcInstitute/cell-eval’s past year of commit activity
    Python 122 MIT 42 6 7 Updated Feb 26, 2026
  • pdex Public

    parallel differential expression for single-cell perturbation sequencing

    ArcInstitute/pdex’s past year of commit activity
    Python 24 MIT 9 3 2 Updated Feb 25, 2026
  • numba-mwu Public
    ArcInstitute/numba-mwu’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2026
  • state-reproduce Public

    Reproduce analyses and baselines from the State paper

    ArcInstitute/state-reproduce’s past year of commit activity
    Jupyter Notebook 13 6 3 0 Updated Feb 25, 2026
  • binseq Public

    A high efficiency binary format for sequencing data

    ArcInstitute/binseq’s past year of commit activity
    Rust 95 6 6 0 Updated Feb 25, 2026

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