java.lang.InternalError: Can't connect to window server - not enough permissions

[ZheFrench]

Hi ,

I'm using igv_plotter on Mac OS X Server 10.7.5 with IGV_2.3.60.

/usr/bin/python2.7 /usr/local/bin/igv_plotter --igv-jar-path=/Users/galaxy_dev_user/variant-calling-pipeline-dev/source/IGV_2.3.60/igv.jar --genome=hg19 --max-panel-height=1000 A34_S1.bam chr6:16327800-16328025 chr6:16327815-16328025 chr12:112036705-112036873 chr14:92537305-92537446 chr19:13318623-13318761 -p SAM.SHOW_ALL_BASES=TRUE -v -o=LOBSTR_

I'm getting the following error :

"java.lang.InternalError: Can't connect to window server - not enough permissions"

Could you give me a hint on that ?

This the complete log :

INFO:root:Executing commands:
INFO:root: genome hg19
INFO:root: preference SAM.SHOW_ALL_BASES TRUE
INFO:root: load XXXX.R1.treated.aligned.sorted.bam
INFO:root: maxPanelHeight 1000
INFO:root: goto chr6:16327800-16328025
INFO:root: snapshot LOBSTR_s1__chr6_16327800_16328025.png
INFO:root: goto chr6:16327815-16328025
INFO:root: snapshot LOBSTR_s2__chr6_16327815_16328025.png
INFO:root: goto chr12:112036705-112036873
INFO:root: snapshot LOBSTR_s3__chr12_112036705_112036873.png
INFO:root: goto chr14:92537305-92537446
INFO:root: snapshot LOBSTR_s4__chr14_92537305_92537446.png
INFO:root: goto chr19:13318623-13318761
INFO:root: snapshot LOBSTR_s5__chr19_13318623_13318761.png
INFO:root: exit
INFO:root:Hiding IGV window.
INFO:root:Launching IGV: java -Xmx1024M -jar /Users/galaxy_dev_user/variant-calling-pipeline-dev/source/IGV_2.3.60/igv.jar -b /var/folders/wp/f71g0ddd0959nzxz5jdqrqcw0000h4/T/tmpEaS4lH
INFO:root:INFO [2016-01-21 11:33:35,834] [DirectoryManager.java:149] [main] IGV Directory: /Users/galaxy_dev_user/igv
INFO:root:INFO [2016-01-21 11:33:35,834] [DirectoryManager.java:149] IGV Directory: /Users/galaxy_dev_user/igv
INFO:root:INFO [2016-01-21 11:33:35,840] [Main.java:85] [main] Startup IGV Version 2.3.47 (59)03/26/2015 10:22 PM
INFO:root:INFO [2016-01-21 11:33:35,840] [Main.java:86] [main] Java 1.6.0_65
INFO:root:INFO [2016-01-21 11:33:35,840] [DirectoryManager.java:58] [main] Fetching user directory...
INFO:root:ERROR [2016-01-21 11:33:35,886] [DefaultExceptionHandler.java:42] [main] Unhandled exception
INFO:root:java.lang.InternalError: Can't connect to window server - not enough permissions.
INFO:root: at java.lang.ClassLoader$NativeLibrary.load(Native Method)
INFO:root: at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1833)
INFO:root: at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1730)
INFO:root: at java.lang.Runtime.loadLibrary0(Runtime.java:823)
INFO:root: at java.lang.System.loadLibrary(System.java:1044)
INFO:root: at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:50)
INFO:root: at java.security.AccessController.doPrivileged(Native Method)
INFO:root: at java.awt.Toolkit.loadLibraries(Toolkit.java:1605)
INFO:root: at java.awt.Toolkit.(Toolkit.java:1627)
INFO:root: at sun.awt.AppContext$2.run(AppContext.java:240)
INFO:root: at sun.awt.AppContext$2.run(AppContext.java:226)
INFO:root: at java.security.AccessController.doPrivileged(Native Method)
INFO:root: at sun.awt.AppContext.initMainAppContext(AppContext.java:226)
INFO:root: at sun.awt.AppContext.access$200(AppContext.java:112)
INFO:root: at sun.awt.AppContext$3.run(AppContext.java:306)
INFO:root: at java.security.AccessController.doPrivileged(Native Method)
INFO:root: at sun.awt.AppContext.getAppContext(AppContext.java:287)
INFO:root: at javax.swing.SwingUtilities.appContextGet(SwingUtilities.java:1843)
INFO:root: at javax.swing.UIManager.getLAFState(UIManager.java:221)
INFO:root: at javax.swing.UIManager.maybeInitialize(UIManager.java:1408)
INFO:root: at javax.swing.UIManager.getDefaults(UIManager.java:645)
INFO:root: at javax.swing.filechooser.FileSystemView.getFileSystemView(FileSystemView.java:63)
INFO:root: at org.broad.igv.DirectoryManager.getUserDirectory(DirectoryManager.java:59)
INFO:root: at org.broad.igv.ui.Main.initApplication(Main.java:87)
INFO:root: at org.broad.igv.ui.Main.main(Main.java:65)
IGV crashed: IGV exited with non-zero exit code: 1