Skip to content

questions about reading data #4

@ikun-jinitaimei

Description

@ikun-jinitaimei
...: data_dir = '/work/sjp/data/'

In [23]: scalesc = ssc.ScaleSC(data_dir=data_dir,
...: max_cell_batch=1e5, # no more than 1e5 is suggested
...: preload_on_cpu=True,
...: preload_on_gpu=True,
...: save_raw_counts=False,
...: save_norm_counts=False,
...: output_dir='test_scalesc_2.9M_results')
In [24]:
In [24]: print(scalesc.adata.shape)
(2915977, 5001)
In [25]: print(scalesc.reader.shape)
(-1, -1)

scalesc.reader.shape displays (-1, -1), which is very strange, causing problems in subsequent data processing. I implore you to help. Thank you!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions